MacVector lets you align one or more sequences against a reference sequence so that you can quickly identify any differences. There are two main functions.
Sequence Confirmation lets you align one or more chromatogram (trace) sample files against a reference sequence so that you can quickly identify any differences. This can be used for confirming the sequence of a cloned fragment of DNA or for identifying SNPs and other differences between clones.
cDNA Alignment lets you align one or more cDNA clones against a reference genomic sequence. This can be used for identifying where exon/intron boundaries are in your cDNA/mRNA sequences.
CRISPR INDEL Detection is ideal for screening reads for the short insertions, deletions or substitutions resulting from CRISPR experiments.
To use this feature.
How to quickly align sequencing reads against a reference sequence.