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De novo assembly of reads with Velvet

Velvet

Velvet is a de novo assembler intended for next generation reads. Velvet is ideal for assembling Illumina sequencing reads of bacterial genomes on a mid range Mac. With paired read data it produces very good contigs. For example a 7Mb genome with an N50 of 103kbp was produced from 16 million paired Illumina reads in one hour on a 16GB 2007 Mac Pro.

For more details on using Velvet see the Velvet technical page

Related Topics.

Assembler

Quick Start

Assembling sequences

Short Read Assembly

Base calling

SPAdes; de novo assembly

Importing existing assemblies to an Assembly Project

Bowtie

SPAdes

Flye

Velvet: Preferences