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MacVector File Extensions

MacVector now uses Uniform Type Identifiers (UTIs) to uniquely identify file formats that the application either reads or creates. See Apple's description of UTIs on their documentation pages:

http://developer.apple.com/documentation/Carbon/Conceptual/understanding_utis/understand_utis_intro/chapter_1_section_1.html#//apple_ref/doc/uid/TP40001319-CH201-SW1

http://developer.apple.com/documentation/Carbon/Conceptual/understanding_utis/understand_utis_conc/chapter_2_section_2.html#//apple_ref/doc/uid/TP40001319-CH202-SW1

The table below is a list of the file types MacVector will read and create. MacVector exports those UTIs that are unique to MacVector: matrix, bias, binary sequence files, etc. In addition MacVector imports a number of chemical MIME type or text sequence files. These UTIs are all registered with with Mac OS X and Launch Services uses the information to associate files with MacVector.

As the Apple documentation states the UTI brings together type identification from multiple methodologies. The files saved on Mac OS systems where OSType has been a common means of identifying files can now work with other system that might have used file extensions. When downloading files where MIME types are employed to identify data formats browsers and other tools can now locate appropriate applications that can handle the data. If the tables are complete then users should be able to open files whether created on a Macintosh or transferred from another system.

Format Description Confirms to Standard OSTypes Extensions MIME Types
public.abi DNA Chromatogram File public.plain-text ABIF abi application/x-dna
public.bsml BSML File public.plain-text bsml
public.emb EMBL Nucleotide Format File public.plain-text emb embl chemical/x-embl-dl-nucleotide
public.fa FASTA Formatted Sequence File public.plain-text fa fna fsa fasta mpfa chemical/x-fasta chemical/seq-aa-fasta chemical/seq-na-fasta
public.gb GenBank Flat File public.plain-text gb gen chemical/x-genbank chimical/seq-na-genbank
public.gp GenPept Flat File public.plain-text gp chmical/seq-aa-genpept
public.msf Multiple Sequence Format File public.plain-text msf
public.nex Nexus File public.plain-text nex nxs
public.phy Phylip File public.plain-text phy
public.plain-text Text Document text txt text/plain
public.rsf Rich Sequence Format File public.plain-text rsf
public.scf DNA Sequence Chromatogram File public.plain-text SCF3 scf
public.sqn Sequin File public.plain-text sqn
public.tbl Sequin File public.plain-text tbl
com.macvector.assembly MacVector Assembly File public.plain-text AXML axml
com.macvector.bias MacVector Codon Bias File BIAS bias
com.macvector.library MacVector Library File MVTF
com.macvector.msan MacVector NA Alignment File MSAN msan
com.macvector.msap MacVector AA Alignment File MSAP msap
com.macvector.nmat MacVector NA Matrix File NMAT nmat
com.macvector.nsub MacVector NA Subsequence File NSUB nsub
com.macvector.nucleotide MacVector NA Sequence File NUCL nucl
com.macvector.penz MacVector AA Enzyme File PENZ penz
com.macvector.pmat MacVector AA Matrix File PMAT pmat
com.macvector.protein MacVector AA Sequence File PROT prot
com.macvector.psub MacVector AA Subsequence File PSUB psub
com.macvector.renz MacVector NA Enzyme File RENZ renz

Related Topics.

Sequence editor

Features table

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