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Analyzing Sequences with MacVector

Restriction enzyme Searching for restriction sites
Filtering restriction site results
Displaying restriction site results
Automatic Restriction Enzyme Analysis

Nucleic acid subsequence Searching for subsequences
Filtering subsequences results
Displaying subsequence results
Open reading frames

Nucleic Acid Analysis Toolbox Nucleic Acid Analysis Toolbox results window
Base composition
Nucleotide frequency histograms

Primers Design Primers (Primer3)
PCR primer pairs
Test PCR primer pair
Sequencing primers/probes
Test sequencing primer/probe

Translating DNA to protein Generating a transcript
Translating DNA or mRNA to protein
Reverse translation

Proteolytic enzyme Searching for proteolytic sites
Filtering proteolytic site results
Displaying proteolytic site results
Protein subsequence Searching for protein motifs
Filtering motif results
Displaying motif results

Protein analysis toolbox

Create Dot Plots
Performing a DNA matrix analysis
Displaying DNA matrix results
Performing a protein matrix analysis
Displaying matrix results

Creating Multiple Sequence Alignments Displaying an alignment
Performing a ClustalW alignment
Performing a T-Coffee alignment
Performing a Muscle alignment

Guide tree
Position masking
Reconstructing phylogenies
Viewing and editing trees
The tree viewer window
Editing trees
Setting the tree display options
Sorting MSAs top match trees
Saving and printing trees

Align to Reference The main window
Automatic assembly
Editing assemblies